One option is to choose Run from the Windows Start menu, type cmd, and click OK Note that CommandLineHelp.pdf (available below) also includes screenshots for these steps. In order to properly run a command line application, you will need to follow these steps. Exe) and a black window appears very briefly and then disappears (see Figure 2 in CommandLineHelp.pdf) You run the program (either by shortcut or double clicking the.ResidueFrequencySummarizer.exe) and, again, you see a black window in the background and a syntax window in the foreground (see Figure 1 in CommandLineHelp.pdf) You navigate to the program's folder in C:\Program Files\ and double click the program executable (e.g.Start->Programs->PAST Toolkit->Residue Frequency Summarizer) and a black window appears in the background, while a Program Syntax window appears in the foreground (see Figure 1 in CommandLineHelp.pdf, available below) You will know the program is a command line application if you see one of the following behaviors: The following discussion is provided to help you run command line applications. This means that they do not have a graphical user interface (GUI) and, instead, must be run via the Windows Command Prompt. Several of the applications available on this site are command-line only applications.
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